_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-35
 Query name: gi|1035275859|ref|XP_008312201.2| PREDICTED: redox-regulatory protein FAM213A-like [Cynoglossus semilaevis]
 Query range: 2-219  (total 221)

 Target: /data/www-rg/seblastian_results/728301951/tempfiles/temptarget.fasta
 Chromosome: OMLM01009762.1:subseq_0,99223_ Strand: +
 Positions:
 -Exon 1  47859        48009
 -Exon 2  48160        48251
 -Exon 3  48540        48680
 -Exon 4  48898        49062
 -Exon 5  49143        49247

 Redox box: YES

Query   MAEGVVVRVVSSFFGLFRAVMNFVTNVFLTPPLKATLKHLEETELKTLTGE <---Intron---> PITLKAKSLWDKSGAVVMAVRRPGUFLCRE <-
        /| |//   |//  |/  / ||  ||/||| |||||| ||||||||||/|/ <   150bp    >   |/||||||/||||||||||||||||||| < 
Target  LAMGLLTSAVATVGGIVTSFMNLFTNIFLTSPLKATLTHLEETELKTLSGD                TKTVKAKSLWEKSGAVVMAVRRPGUFLCRE   
        cgagccaagggagggagaataattaaattatccagacactggagcaattgg                aaagagatttgatggggaggcccgttttag   
        tctgttcgctcctggttcgttattcatttccctacctcataacatactcg                acactacactgaacgctttctggcggttgga   
        tggtcccccgctgtccctttgcacttccgaggggttcatgggtgcaggaa                tcgtgacgtggagtatctgagggtaatgcag   
                                                                                                   *        

Query   --Intron---> EAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEIFLDKK <---Intron---> KRFYGPRERKMGLLAFLRPGVWMN
          288bp    > ||||||||||||||||||||||||||||||||||||/||||||||/| <   217bp    > /|||||||||||/||||| |||||
Target               EAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPFFKGEIFLDEK                RRFYGPRERKMGVLAFLRVGVWMN
                     ggggcttcacccggcggcctgggaggggaggcatacttaggattgga                acttgccgcaaggcgtccgggtaa
                     accatcctacataatgtctacttaaatgcataatgcttagatttaaa                ggtagcgagatgttcttgtgtgta
                     gtaggctgacggtgcgctgttggggcctcgcgccaaccgggtcgtag                atttgctggggtcgactttggggt
                                                                                                            

Query   GLRAFQKGFMGNVLGEGFVLGGVFVIGRGEQ <---Intron---> GILLEHREIEFGDKVNINDVFQAVRRIPVELVPIE
        |||||/||||||| ||||||||||||||||| <    80bp    > ||||||||||||||||| || || |||  | /|/|
Target  GLRAFRKGFMGNVSGEGFVLGGVFVIGRGEQ                GILLEHREIEFGDKVNIKDVIQAARRISQEPLPLE
        gcagtaagtagagtgggtgcgggtgagcggc                gaccgcagagtggagaaaggacggaaatcgccccg
        gtgctgagttgatcgagtttggttttgggaa                gtttaagatatgaatataattaccggtcaactcta
        ccgctggccgacggagctcgtggtctaaagg                aatggcagtatgtacctgtccatcaaaaggtgtaa
                                                                                          
 Sequence until next stop: 
AAGTACTAA
 K  Y  * 

 Distance CDS-SECIS: 269 ; UGA-SECIS: 695

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01009762.1:subseq_0,99223_ Strand = + Positions = 49517 - 49586
 Found by:  Infernal (score=39.13) Covels (score=34.83)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -22.3

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....{[[{((((((({(((.....---.......)))})))))))}]]}..--..-.)))))))).
 target  UCUGAGUGUG--UUAAUGAUGGUCUGUCUUUAAACU---CAAUGGAGGAAGCAGACUUGAUGC--CC-AACACUCGGU
                         ****           ^^^                       ****